Run GAGE gene-set enrichment analysis for a given feature

Run GAGE gene-set enrichment analysis for a given feature

run_gage_for_feature(voom.hits, gsets, same.dir = TRUE)

Arguments

voom.hits

A data frame from the voom analysis, _unthresholded_
gsets

A list of gene sets, constructed by the geneIds function above
same.dir

same.dir argument for the `gage` function

Value

pathways.merged A data frame containing up- and down-regulated pathways